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Macro and nano scale modelling of water-water interactions at ambient and low temperature: relaxation and residence times

机译:室温和低温下水与水相互作用的宏观和纳米尺度模拟:弛豫和停留时间

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摘要

The decay dynamics of ambient and low temperature liquid water has been investigated through all-atom molecular dynamics simulations, residence times calculations and time correlation functions from 300 K down to 243 K. Those simulations replicate the experimental value of the self-diffusion constant as a function of temperature by tuning the damping factor of the Langevin equation of motion. A stretched exponential function exp[−(t/τ)β] has been found to properly describe the relaxation of residence times calculated at different temperatures for solvent molecules in a nanodrop of free water modelled as a sphere of nanometric dimensions. As the temperature goes down the decay time τ increases showing a divergence at Ts = 227 ± 3 K. The temperature independence of the dimensionless stretched exponent β = 0.59 ± 0.01 suggests the presence of, not a characteristic relaxation time (since β ≠ 1), but a distribution of decay times that also holds at low temperature. An explanation for such heterogeneity can be found at the nanoscopic level. Moreover it can be concluded that the distribution of times already reported for the dynamics of water surrounding proteins (β ≤ 0.5) can not be exclusively due to the presence of the biomolecule itself since isolated water also exhibits such behaviour. The above reported Ts and β values quantitatively reproduce experimental data.
机译:通过从300 K到243 K的全原子分子动力学模拟,停留时间计算和时间相关函数,研究了环境和低温液态水的衰减动力学。这些模拟将自扩散常数的实验值复制为通过调整运动的Langevin阻尼系数来调节温度的函数。发现拉伸指数函数exp [-(t /τ)β]可以恰当地描述溶剂分子在建模为纳米尺寸范围的自由水的纳米滴中在不同温度下计算的停留时间的弛豫。随着温度下降,衰减时间τ增大,在Ts = 227±3 K处发散。无量纲拉伸指数β= 0.59±0.01的温度独立性表明存在特征弛豫时间,而不是特征弛豫时间(因为β≠1)。 ,但衰减时间的分布在低温下也保持不变。可以在纳米水平上找到这种异质性的解释。此外,可以得出结论,围绕蛋白质(β≤0.5)的水的动力学动力学已经报道的时间分布不能仅仅由于生物分子本身的存在,因为分离出的水也表现出这种行为。以上报道的Ts和β值定量地再现了实验数据。

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